Dokumentation

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Search#

bdp search queries the registry to discover available data sources.

Usage#

bash
bdp search <query>

Examples#

bash
# Search by organism or keyword
bdp search uniprot
# Search for a specific format
bdp search hpo obo
# Search by organization
bdp search ncbi taxonomy

Output#

Results show the source identifier, format, organization, and latest available version:

Code
SOURCE ID FORMAT ORG VERSION
uniprot/swissprot.fasta fasta UniProt 2024-03
uniprot/trembl.fasta fasta UniProt 2024-03
ncbi/taxonomy.dump dump NCBI 2024-03-01

Adding a Result#

Copy the source ID from search output and pass it to bdp source add:

bash
bdp source add uniprot:swissprot-fasta@1.0